So I bought myself a Focusrite Scarlett Solo 3rd Gen USB Audio Interface and followed the instructions online and started up Ableton Live and then started recording myself but quickly noticed on the playback I couldn't hear the top strings.
So my neighbour brought up his amp and tried out the Epiphone and it sounded fine with the amp but we then did a recording test with me plucking each string from low E to high E and below you can see the results where the top strings have a low wavelength

We then tested out my Yahamah Guitar and you can see the results below that every string had a good wavelength.

So contacted the shop where I bought the guitar from and they said they would check it out in case there was a problem with the pickup. Got a call from them this morning saying my guitar and it's pickup was fine when they put it through the amp and there was nothing else they could do for me.
So I'm back to square one again as of tonight I tried recording my guitar again and still can't hear the top strings so this time I did a test with audacity and the same results came up again as you can see the top E has such a low frequency to the other strings.

I am at a complete loss as to what to do next so any advice or help would be most appreciated.